Lalith E. Perera : rechercher sur Z-Library

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1

A smooth particle mesh Ewald method

Essmann, Ulrich, Perera, Lalith, Berkowitz, Max L., Darden, Tom, Lee, Hsing, Pedersen, Lee G.

Journal:

The Journal of Chemical Physics

Année:

1995

Langue:

english

Fichier:

PDF, 577 KB

english, 1995

2

SSR markers indicate a common origin of self-pollinating dwarf coconut in South-East Asia under domestication

Perera, Lalith, Baudouin, Luc, Mackay, Ian

Journal:

Scientia Horticulturae

Année:

2016

Langue:

english

Fichier:

PDF, 874 KB

english, 2016

3

Bioassay-guided fractionation and identification of α-amylase inhibitors from Syzygium cumini leaves

Poongunran, Jeyakumaran, Perera, Handunge Kumudu Irani, Jayasinghe, Lalith, Fernando, Irushika Thushari, Sivakanesan, Ramaiah, Araya, Hiroshi, Fujimoto, Yoshinori

Journal:

Pharmaceutical Biology

Année:

2017

Langue:

english

Fichier:

PDF, 884 KB

english, 2017

4

Dengue fever may mislead the surgeons when it presents as an acute abdomen

Jayasundara, Bingumal, Perera, Lalith, de Silva, Ajith

Journal:

Asian Pacific Journal of Tropical Medicine

Année:

2017

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2017

5

Associations between disc space narrowing, anterior osteophytes and disability in chronic mechanical low back pain: a cross sectional study

Perera, Romain Shanil, Dissanayake, Poruwalage Harsha, Senarath, Upul, Wijayaratne, Lalith Sirimevan, Karunanayake, Aranjan Lional, Dissanayake, Vajira Harshadeva Weerabaddana

Journal:

BMC Musculoskeletal Disorders

Année:

2017

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2017

6

Differential in Vitro Biological Action, Coregulator Interactions, and Molecular Dynamic Analysis of Bisphenol A (BPA), BPAF, and BPS Ligand–ERα Complexes

Li, Yin, Perera, Lalith, Coons, Laurel A., Burns, Katherine A., Tyler Ramsey, J., Pelch, Katherine E., Houtman, René, van Beuningen, Rinie, Teng, Christina T., Korach, Kenneth S.

Journal:

Environmental Health Perspectives

Année:

2018

Langue:

english

Fichier:

PDF, 5.14 MB

english, 2018

7

Determining the endocrine disruption potential of industrial chemicals using an integrative approach: Public databases, in vitro exposure, and modeling receptor interactions

Alofe, Olubusayo, Kisanga, Edwina, Inayat-Hussain, Salmaan H., Fukumura, Masao, Garcia-Milian, Rolando, Perera, Lalith, Vasiliou, Vasilis, Whirledge, Shannon

Journal:

Environment International

Année:

2019

Langue:

english

Fichier:

PDF, 4.92 MB

english, 2019

8

Total Synthesis and Selective Activity of a New Class of Conformationally Restrained Epothilones

Mamoun M. Alhamadsheh, Shuchi Gupta, Richard A. Hudson, Lalith Perera, L. M. Viranga Tillekeratne

Journal:

Chemistry - A European Journal

Année:

2008

Langue:

english

Fichier:

PDF, 540 KB

english, 2008

9

Predicted solution structure of zymogen human coagulation FVII

Lalith Perera, Thomas A. Darden, Lee G. Pedersen

Journal:

Journal of Computational Chemistry

Année:

2002

Langue:

english

Fichier:

PDF, 323 KB

english, 2002

10

Binding of 5-phospho-D-arabinonohydroxamate and 5-phospho-D-arabinonate inhibitors to zinc phosphomannose isomerase from Candida albicans studied by polarizable molecular mechanics and quantum mechanics

Celine Roux, Nohad Gresh, Lalith E. Perera, Jean-Philip Piquemal, Laurent Salmon

Journal:

Journal of Computational Chemistry

Année:

2007

Langue:

english

Fichier:

PDF, 600 KB

english, 2007

11

Atomic forces for geometry-dependent point multipole and Gaussian multipole models

Dennis M. Elking, Lalith Perera, Robert Duke, Thomas Darden, Lee G. Pedersen

Journal:

Journal of Computational Chemistry

Année:

2010

Langue:

english

Fichier:

PDF, 244 KB

english, 2010

12

A finite field method for calculating molecular polarizability tensors for arbitrary multipole rank

Dennis M. Elking, Lalith Perera, Robert Duke, Thomas Darden, Lee G. Pedersen

Journal:

Journal of Computational Chemistry

Année:

2011

Langue:

english

Fichier:

PDF, 437 KB

english, 2011

13

Enthalpies of formation and stabilization energies of Br− (H2O)n (n=1,2, …, 15) clusters. Comparisons between molecular dynamics computer simulations and experiment

Laura S. Sremaniak, Lalith Perera, Max L. Berkowitz

Journal:

Chemical Physics Letters

Année:

1994

Langue:

english

Fichier:

PDF, 514 KB

english, 1994

14

Engineering of betabellin-15d: A 64 residue beta sheet protein that forms long narrow multimeric fibrils

Amareth Lim, Matthew J. Saderholm, Mathias Kroll, Yibing Yan, Lalith Perera, Bruce W. Erickson, Alexander M. Makhov, Jack D. Griffith

Journal:

Protein Science

Année:

1998

Langue:

english

Fichier:

PDF, 4.68 MB

english, 1998

15

Ion solvation in water clusters

Lalith Perera, Max L. Berkowitz

Journal:

Zeitschrift für Physik D Atoms, Molecules and Clusters

Année:

1993

Langue:

english

Fichier:

PDF, 375 KB

english, 1993

16

Ambiguous genetic relationships among coconut (Cocos nuciferaL.) cultivars: the effects of outcrossing, sample source and size, and method of analysis

Margarita Mauro-Herrera, Alan W. Meerow, Lalith Perera, Joanne Russell, Raymond J. Schnell

Journal:

Genetic Resources and Crop Evolution

Année:

2010

Langue:

english

Fichier:

PDF, 383 KB

english, 2010

17

Conformational dependence of13C shielding and coupling constants for methionine methyl groups

Glenn L. Butterfoss, Eugene F. DeRose, Scott A. Gabel, Lalith Perera, Joseph M. Krahn, Geoffrey A. Mueller, Xunhai Zheng, Robert E. London

Journal:

Journal of Biomolecular NMR

Année:

2010

Langue:

english

Fichier:

PDF, 642 KB

english, 2010

18

Template strand scrunching during DNA gap repair synthesis by human polymerase λ

Garcia-Diaz, Miguel, Bebenek, Katarzyna, Larrea, Andres A, Havener, Jody M, Perera, Lalith, Krahn, Joseph M, Pedersen, Lars C, Ramsden, Dale A, Kunkel, Thomas A

Journal:

Nature Structural and Molecular Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2009

19

Computational study of the putative active form of protein Z (PZa): Sequence design and structural modeling

Vasu Chandrasekaran, Chang Jun Lee, Robert E. Duke, Lalith Perera, Lee G. Pedersen

Journal:

Protein Science

Année:

2008

Langue:

english

Fichier:

PDF, 682 KB

english, 2008

20

HPAM: Hirshfeld partitioned atomic multipoles

Dennis M. Elking, Lalith Perera, Lee G. Pedersen

Journal:

Computer Physics Communications

Année:

2012

Langue:

english

Fichier:

PDF, 318 KB

english, 2012

21

Cooperative damage recognition by UvrA and UvrB: Identification of UvrA residues that mediate DNA binding

Deborah L. Croteau, Matthew J. DellaVecchia, Lalith Perera, Bennett Van Houten

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2008

22

Catalytic mechanism of human DNA polymerase λ with Mg2+ and Mn2+ from ab initio quantum mechanical/molecular mechanical studies

G. Andrés Cisneros, Lalith Perera, Miguel García-Díaz, Katarzyna Bebenek, Thomas A. Kunkel, Lee G. Pedersen

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2008

23

Modeling of the DNA-binding site of yeast Pms1 by mass spectrometry

Allison N. Schorzman, Lalith Perera, Jenny M. Cutalo-Patterson, Lars C. Pedersen, Lee G. Pedersen, Thomas A. Kunkel, Kenneth B. Tomer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2011

24

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

Tom Darden, Lalith Perera, Leping Li, Lee Pedersen

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 130 KB

english, 1999

25

Four loops of the catalytic domain of factor VIIa mediate the effect of the first EGF-like domain substitution on factor VIIa catalytic activity

Jianping Jin, Lalith Perera, Darrel Stafford, Lee Pedersen

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 593 KB

english, 2001

26

The solvation of Cl−, Br−, and I− in acetonitrile clusters: Photoelectron spectroscopy and molecular dynamics simulations

Markovich, Gil, Perera, Lalith, Berkowitz, Max L., Cheshnovsky, Ori

Journal:

The Journal of Chemical Physics

Année:

1996

Langue:

english

Fichier:

PDF, 526 KB

english, 1996

27

Heparan Sulfate Biosynthesis: A Theoretical Study of the Initial Sulfation Step by N-Deacetylase/N-Sulfotransferase

Gorokhov, Anna, Perera, Lalith, Darden, Thomas A., Negishi, Masahiko, Pedersen, Lars C., Pedersen, Lee G.

Journal:

Biophysical Journal

Année:

2000

Langue:

english

Fichier:

PDF, 165 KB

english, 2000

28

Modeling Zymogen Protein C

Perera, Lalith, Foley, Charles, Darden, Thomas A., Stafford, Darrel, Mather, Timothy, Esmon, Charles T., Pedersen, Lee G.

Journal:

Biophysical Journal

Année:

2000

Langue:

english

Fichier:

PDF, 398 KB

english, 2000

29

Structure and Dynamics of Zymogen Human Blood Coagulation Factor X

Venkateswarlu, Divi, Perera, Lalith, Darden, Tom, Pedersen, Lee G.

Journal:

Biophysical Journal

Année:

2002

Langue:

english

Fichier:

PDF, 523 KB

english, 2002

30

Explicit Water Near the Catalytic I Helix Thr in the Predicted Solution Structure of CYP2A4

Gorokhov, Anna, Negishi, Masahiko, Johnson, Eric F., Pedersen, Lars C., Perera, Lalith, Darden, Tom A., Pedersen, Lee G.

Journal:

Biophysical Journal

Année:

2003

Langue:

english

Fichier:

PDF, 253 KB

english, 2003

31

Probing the Structural Changes in the Light Chain of Human Coagulation Factor VIIa Due to Tissue Factor Association

Perera, Lalith, Darden, Thomas A., Pedersen, Lee G.

Journal:

Biophysical Journal

Année:

1999

Langue:

english

Fichier:

PDF, 931 KB

english, 1999

32

Amino Acid Substitution in the Active Site of DNA Polymerase β Explains the Energy Barrier of the Nucleotidyl Transfer Reaction

Batra, Vinod K., Perera, Lalith, Lin, Ping, Shock, David D., Beard, William A., Pedersen, Lars C., Pedersen, Lee G., Wilson, Samuel H.

Journal:

Journal of the American Chemical Society

Année:

2013

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2013

33

Unusual Fragmentation Pathways in Collagen Glycopeptides

Irina Perdivara, Lalith Perera…

Journal:

Journal of the American Society for Mass Spectrometry

Année:

2013

Langue:

english

Fichier:

PDF, 570 KB

english, 2013

34

Molecular Dynamics Simulation of Sodium Dodecyl Sulfate Micelle in Water: Micellar Structural Characteristics and Counterion Distribution

Bruce, Chrystal D., Berkowitz, Max L., Perera, Lalith, Forbes, Malcolm D. E.

Journal:

Journal of Physical Chemistry B

Année:

2002

Langue:

english

Fichier:

PDF, 172 KB

english, 2002

35

Free energy profiles for lithium(1+) and iodide ions approaching the platinum(100) surface: a molecular dynamics study

Perera, Lalith, Berkowitz, Max L.

Journal:

Journal of Physical Chemistry

Année:

1993

Langue:

english

Fichier:

PDF, 937 KB

english, 1993

36

Characterization of an anti-Bla g 1 scFv: Epitope mapping and cross-reactivity

Mueller, Geoffrey A., Ankney, John A., Glesner, Jill, Khurana, Taruna, Edwards, Lori L., Pedersen, Lars C., Perera, Lalith, Slater, Jay E., Pomés, Anna, London, Robert E.

Journal:

Molecular Immunology

Année:

2014

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2014

37

The Origin of the Hydration Interaction of Lipid Bilayers from MD Simulation of Dipalmitoylphosphatidylcholine Membranes in Gel and Liquid Crystalline Phases

Essmann, Ulrich, Perera, Lalith, Berkowitz, Max L.

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 2.14 MB

english, 1995

38

Trans − Cis Isomerization of Proline 22 in Bovine Prothrombin Fragment 1: A Surprising Result of Structural Characterization †

Perera, Lalith, Darden, Thomas A., Pedersen, Lee G.

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 115 KB

english, 1998

39

Molecular Dynamics Simulations of Sodium Dodecyl Sulfate Micelle in Water: The Behavior of Water

Bruce, Chrystal D., Senapati, Sanjib, Berkowitz, Max L., Perera, Lalith, Forbes, Malcolm D. E.

Journal:

Journal of Physical Chemistry B

Année:

2002

Langue:

english

Fichier:

PDF, 114 KB

english, 2002

40

Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide

DeRose, Eugene F., Perera, Lalith, Murray, Michael S., Kunkel, Thomas A., London, Robert E.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 3.72 MB

english, 2012

41

Role of Water in the Hydration Force Acting between Lipid Bilayers

Perera, Lalith, Essmann, Ulrich, Berkowitz, Max L.

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 194 KB

english, 1996

42

Phylogenetic Distribution and Evolution of the Linked RNA-Binding and NOT1-Binding Domains in the Tristetraprolin Family of Tandem CCCH Zinc Finger Proteins

Blackshear, Perry J., Perera, Lalith

Journal:

Journal of Interferon & Cytokine Research

Année:

2014

Langue:

english

Fichier:

PDF, 693 KB

english, 2014

43

Early Unfolding Response of a Stable Protein Domain to Environmental Changes †

Perera, Lalith, Darden, Thomas A., Duke, Robert E., Venkateswarlu, Divi, Pedersen, Lee G.

Journal:

Journal of Physical Chemistry A

Année:

2004

Langue:

english

Fichier:

PDF, 217 KB

english, 2004

44

Reaction Mechanism of the ε Subunit of E. coli DNA Polymerase III: Insights into Active Site Metal Coordination and Catalytically Significant Residues

Cisneros, G. Andrés, Perera, Lalith, Schaaper, Roel M., Pedersen, Lars C., London, Robert E., Pedersen, Lee G., Darden, Thomas A.

Journal:

Journal of the American Chemical Society

Année:

2009

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2009

45

Synthesis and biological evaluation of largazole analogues with modified surface recognition cap groups

Bhansali, Pravin, Hanigan, Christin L., Perera, Lalith, Casero, Robert A., Tillekeratne, L.M. Viranga

Journal:

European Journal of Medicinal Chemistry

Année:

2014

Langue:

english

Fichier:

PDF, 1.98 MB

english, 2014

46

Many-body effects in molecular dynamics simulations of Na+(H2O)n and Cl−(H2O)n clusters

Perera, Lalith, Berkowitz, Max L.

Journal:

The Journal of Chemical Physics

Année:

1991

Langue:

english

Fichier:

PDF, 812 KB

english, 1991

47

Structural Characterization of the Conformational Change in Calbindin-D 28k upon Calcium Binding Using Differential Surface Modification Analyzed by Mass Spectrometry

Hobbs, Carey A., Deterding, Leesa J., Perera, Lalith, Bobay, Benjamin G., Thompson, Richele J., Darden, Thomas A., Cavanagh, John, Tomer, Kenneth B.

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 3.86 MB

english, 2009

48

Transmembrane Domain Interactions and Residue Proline 378 Are Essential for Proper Structure, Especially Disulfide Bond Formation, in the Human Vitamin K-Dependent γ-Glutamyl Carboxylase †

Tie, Jian-Ke, Zheng, Mei-Yan, Hsiao, Kuang-Ling N., Perera, Lalith, Stafford, Darrel W., Straight, David L.

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 4.21 MB

english, 2008

49

Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide

Freudenthal, Bret D., Beard, William A., Perera, Lalith, Shock, David D., Kim, Taejin, Schlick, Tamar, Wilson, Samuel H.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 8.36 MB

english, 2014

50

Surface solvation for an ion in a water cluster

Herce, David H., Perera, Lalith, Darden, Thomas A., Sagui, Celeste

Journal:

The Journal of Chemical Physics

Année:

2005

Langue:

english

Fichier:

PDF, 836 KB

english, 2005